MNC5627292

EST

ForestTreeDB Contig(dir8): MN ESTs: GQ Reads: GQ Clones: GCAT 2.0 Clusters: GCAT 3.0 Clusters: GCAT 3.1 Clusters:
MN5249971 GQ0223.B7_J20 GQ0223_J20 GQ0041.BR_F01 GQ03712_E18 GQ03712_E18

BLAST

Blastx Description Blastx Hit Id Blastx e-value
40S ribosomal protein S19-1 UniRef100_Q9SGA6 1.8721e-40

Unigene

Unigene Id: 48469
Unigene Sequence: CTTGAGACAAATTTATACTTAAGCTTGAAGCAATGAACTCGTGACATTAAAAAGGACAAACAAAATACTAAAACCTACTA
ATAAAATCCAATTAACAAGACTCAAA*CAGTTTTCAGTGAAAAAACTACAAAAGCCATTTCTCTACTGTGTATGCGCACA
TTCAAACTAGTTTCCTGCTACAAAACTACAAATCCATCTCTCTATTGCTCAAGGTGCAGCAACTGCAATACGACCAGCAA
CCTGATCAAGATCTCTCTGGCCACTAGATGTGATACGCCGTCCACCATTGGGATCCATCTCAACAATATTCATCTTCTCT
AATTGTTGTAGTACATGTCGAGCAATTGATCCACTGCTTTTACAAAAATGAGGAGGACGTGCTCCGTTTCTTTGACGACC
ACCGTAAATTTTAGAAAAAGCTCCTACTCCGATTCCCTTTCTCAAATAGATTTTCCTTGCCATTGAAGCTGCTCTAACAT
AGTACCAGTCAGGATCATATGGAGCGAGTTCCTTGAAAGTGGCTGTCTTTACAAGGTCAGTCCAGTGTGGAAGCTCAATC
TTGCCAGATCGTTTGAGATGTGCAGCATAAGCTGTCACAAACTCGTGGGGAGAGACGTCTTTCACTGTGCACGCCGTTGC
CATGGCTCGAGCCTGCAAACTCCTAATACGAAGCCGGCGACCGCTGAGGGAGACGAAGTGTAAGAACGGTTAGGGTTTTG
TACCAGCGTGAATGGAGACCCAATTTATATTTCTCCTCCCTCGTGC
Full Translation: ARGRRNINWVSIHAGTKP*PFLHFVSLSGRRLRIRSLQARAMATACTVKDVSPHEFVTAYAAHLKRSGKIELPHWTDLVK
TATFKELAPYDPDWYYVRAASMARKIYLRKGIGVGAFSKIYGGRQRNGARPPHFCKSSGSIARHVLQQLEKMNIVEMDPN
GGRRITSSGQRDLDQVAGRIAVAAP*AIERWICSFVAGN*FECAHTQ*RNGFCSFFTENXFESC*LDFISRF*YFVCPF*
CHEFIASSLSINLSQ
Longest Translation Frame: -1
Longest ORF: PFLHFVSLSGRRLRIRSLQARAMATACTVKDVSPHEFVTAYAAHLKRSGKIELPHWTDLVKTATFKELAPYDPDWYYVRA
ASMARKIYLRKGIGVGAFSKIYGGRQRNGARPPHFCKSSGSIARHVLQQLEKMNIVEMDPNGGRRITSSGQRDLDQVAGR
IAVAAP
Max ORF Length: 166

Gene Ontology

Molecular Function by blast Biological Process by blast Cell Component by blast
GO:0003735 structural constituent of ribosome GO:0005515 protein binding GO:0003723 RNA binding GO:0003700 transcription factor activity GO:0006412 translation GO:0007516 hemocyte development (sensu Arthropoda) GO:0030218 erythrocyte differentiation GO:0051272 positive regulation of cell motility GO:0009991 response to extracellular stimulus GO:0000056 ribosomal small subunit export from nucleus GO:0042274 ribosomal small subunit biogenesis and assembly GO:0000723 telomere maintenance GO:0006364 rRNA processing GO:0006355 regulation of transcription, DNA-dependent GO:0005622 intracellular GO:0005840 ribosome GO:0005730 nucleolus GO:0005843 cytosolic small ribosomal subunit (sensu Eukaryota) GO:0005634 nucleus GO:0005829 cytosol

Arabidopsis Gene Index v13.0

Description Blastn Hit Id Blastn e-value
N/A N/A N/A

Pine Gene Index v6.0

Description Blastn Hit Id Blastn e-value
N/A N/A N/A

Spruce Gene Index v2.0

Description Blastn Hit Id Blastn e-value
N/A N/A N/A

Pfam

Description Hit Id e-value
Ribosomal protein S19e PF01090 2.50e-102

SMART

Description Hit Id e-value
tyrkin_6 SM00219 1.40e-18