Usage:
abi-dump
-path
[-outdir ] [-minSpotId ] [-maxSpotId ]
[-minReadLen ] [-noclip] [-origfmt] [-noDotReads]
Where:
-accession Run accession - top level directory for SRA format either downloaded or locally generated
-path Path to (but not including) accession
-outdir Output directory (defaults to current directory)
-minSpotId Minimum spot id to output
-maxSpotId Maximum spot id to output
-minReadLen Minimum read length to output (defaults is 25)
-noclip Indicates don't apply clip quality right
-origfmt Excludes SRR accession & length on defline
-noDotReads No reads consisting only of dots are output
-noSignal Do not write sginal files